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Nature Communications

Publication date: 2016-03-01
Pages: 11071 -
Publisher: Nature Portfolio

Author:

Cornejo-Castillo, Francisco M
Cabello, Ana M ; Salazar, Guillem ; Sánchez-Baracaldo, Patricia ; Lima Mendez, Gipsi ; Hingamp, Pascal ; Alberti, Adriana ; Sunagawa, Shinichi ; Bork, Peer ; de Vargas, Colomban ; Raes, Jeroen ; Bowler, Chris ; Wincker, Patrick ; Zehr, Jonathan P ; Gasol, Josep M ; Massana, Ramon ; Acinas, Silvia G

Keywords:

Science & Technology, Multidisciplinary Sciences, Science & Technology - Other Topics, UCYN-A, MOLECULAR CLOCK, OPEN-OCEAN, INTERACTIVE TREE, N-2 FIXATION, RATES, DIVERSITY, RECONSTRUCTION, IDENTIFICATION, REVEALS, Atlantic Ocean, Biological Evolution, Cyanobacteria, Genomics, Haptophyta, Nitrogen Fixation, Phytoplankton, Seawater, Symbiosis

Abstract:

The unicellular cyanobacterium UCYN-A, one of the major contributors to nitrogen fixation in the open ocean, lives in symbiosis with single-celled phytoplankton. UCYN-A includes several closely related lineages whose partner fidelity, genome-wide expression and time of evolutionary divergence remain to be resolved. Here we detect and distinguish UCYN-A1 and UCYN-A2 lineages in symbiosis with two distinct prymnesiophyte partners in the South Atlantic Ocean. Both symbiotic systems are lineage specific and differ in the number of UCYN-A cells involved. Our analyses infer a streamlined genome expression towards nitrogen fixation in both UCYN-A lineages. Comparative genomics reveal a strong purifying selection in UCYN-A1 and UCYN-A2 with a diversification process ∼91 Myr ago, in the late Cretaceous, after the low-nutrient regime period occurred during the Jurassic. These findings suggest that UCYN-A diversified in a co-evolutionary process, wherein their prymnesiophyte partners acted as a barrier driving an allopatric speciation of extant UCYN-A lineages.