A Machine Learning-Driven Virtual Biopsy System For Kidney Transplant Patients

Yoo, Daniel; Divard, Gillian; Raynaud, Marc; Cohen, Aaron; Mone, Tom D; Rosenthal, John Thomas; Bentall, Andrew J; Stegall, Mark D; Naesens, Maarten; Zhang, Huanxi; Wang, Changxi; Gueguen, Juliette; Kamar, Nassim; Bouquegneau, Antoine; Batal, Ibrahim; Coley, Shana M; Gill, John S; Oppenheimer, Federico; De Sousa-Amorim, Erika; Kuypers, Dirk RJ; Durrbach, Antoine; Seron, Daniel; Rabant, Marion; Van Huyen, Jean-Paul Duong; Campbell, Patricia; Shojai, Soroush; Mengel, Michael; Bestard, Oriol; Basic-Jukic, Nikolina; Juric, Ivana; Boor, Peter; Cornell, Lynn D; Alexander, Mariam P; Coates, P Toby; Legendre, Christophe; Reese, Peter P; Lefaucheur, Carmen; Aubert, Olivier; Loupy, Alexandre

doi:10.1038/s41467-023-44595-z

A Machine Learning-Driven Virtual Biopsy System For Kidney Transplant Patients

Author:

Yoo, Daniel

Divard, Gillian ; Raynaud, Marc ; Cohen, Aaron ; Mone, Tom D ; Rosenthal, John Thomas ; Bentall, Andrew J ; Stegall, Mark D ; Naesens, Maarten ; Zhang, Huanxi ; Wang, Changxi ; Gueguen, Juliette ; Kamar, Nassim ; Bouquegneau, Antoine ; Batal, Ibrahim ; Coley, Shana M ; Gill, John S ; Oppenheimer, Federico ; De Sousa-Amorim, Erika ; Kuypers, Dirk RJ ; Durrbach, Antoine ; Seron, Daniel ; Rabant, Marion ; Van Huyen, Jean-Paul Duong ; Campbell, Patricia ; Shojai, Soroush ; Mengel, Michael ; Bestard, Oriol ; Basic-Jukic, Nikolina ; Juric, Ivana ; Boor, Peter ; Cornell, Lynn D ; Alexander, Mariam P ; Coates, P Toby ; Legendre, Christophe ; Reese, Peter P ; Lefaucheur, Carmen ; Aubert, Olivier ; Loupy, Alexandre

Keywords:

Science & Technology, Multidisciplinary Sciences, Science & Technology - Other Topics, CLASSIFICATION, RISK, ARTERIOSCLEROSIS, CRITERIA, FUTURE, WEDGE, Humans, Kidney Transplantation, Kidney, Transplantation, Homologous, Kidney Diseases, Biopsy

Abstract:

In kidney transplantation, day-zero biopsies are used to assess organ quality and discriminate between donor-inherited lesions and those acquired post-transplantation. However, many centers do not perform such biopsies since they are invasive, costly and may delay the transplant procedure. We aim to generate a non-invasive virtual biopsy system using routinely collected donor parameters. Using 14,032 day-zero kidney biopsies from 17 international centers, we develop a virtual biopsy system. 11 basic donor parameters are used to predict four Banff kidney lesions: arteriosclerosis, arteriolar hyalinosis, interstitial fibrosis and tubular atrophy, and the percentage of renal sclerotic glomeruli. Six machine learning models are aggregated into an ensemble model. The virtual biopsy system shows good performance in the internal and external validation sets. We confirm the generalizability of the system in various scenarios. This system could assist physicians in assessing organ quality, optimizing allograft allocation together with discriminating between donor derived and acquired lesions post-transplantation.