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Nature Communications

Publication date: 2023-05-24
Volume: 14
Publisher: Nature Portfolio

Author:

Van Acker, Zoe P
Perdok, Anika ; Hellemans, Ruben ; North, Katherine ; Vorsters, Inge ; Cappel, Cedric ; Dehairs, Jonas ; Swinnen, Johannes V ; Sannerud, Ragna ; Bretou, Marine ; Damme, Markus ; Annaert, Wim

Keywords:

Science & Technology, Multidisciplinary Sciences, Science & Technology - Other Topics, AMYLOID PRECURSOR PROTEIN, SPORADIC ALZHEIMERS-DISEASE, CHOLESTEROL, LYSOSOME, HOMEOSTASIS, AUTOPHAGY, CONTACTS, PATHWAY, PLD3, DEGRADATION, DNA, Mitochondrial, Nucleotides, Mitochondria, Nucleotidyltransferases, Amyloidogenic Proteins, Chromogranin A, Phospholipases, G0C4220N#55522043, 12ZL321N#55739363, 1164923N#56761017, C14/21/095#56286976, KA/20/085#56130159

Abstract:

Phospholipase D3 (PLD3) polymorphisms are linked to late-onset Alzheimer's disease (LOAD). Being a lysosomal 5'-3' exonuclease, its neuronal substrates remained unknown as well as how a defective lysosomal nucleotide catabolism connects to AD-proteinopathy. We identified mitochondrial DNA (mtDNA) as a major physiological substrate and show its manifest build-up in lysosomes of PLD3-defective cells. mtDNA accretion creates a degradative (proteolytic) bottleneck that presents at the ultrastructural level as a marked abundance of multilamellar bodies, often containing mitochondrial remnants, which correlates with increased PINK1-dependent mitophagy. Lysosomal leakage of mtDNA to the cytosol activates cGAS-STING signaling that upregulates autophagy and induces amyloid precursor C-terminal fragment (APP-CTF) and cholesterol accumulation. STING inhibition largely normalizes APP-CTF levels, whereas an APP knockout in PLD3-deficient backgrounds lowers STING activation and normalizes cholesterol biosynthesis. Collectively, we demonstrate molecular cross-talks through feedforward loops between lysosomal nucleotide turnover, cGAS-STING and APP metabolism that, when dysregulated, result in neuronal endolysosomal demise as observed in LOAD.