Author:

Keywords:

Clinical Text Mining, Computer Science, Computer Science, Information Systems, Deep Learning AMDP, Electrical Health Records, Health Care Sciences & Services, Life Sciences & Biomedicine, Medical Informatics, Mental State Examination, Science & Technology, SUICIDE, Technology, Deep Learning, AMDP, Data Mining, Deep Learning, Electronic Health Records, Humans, Mental Health, Natural Language Processing, Neural Networks, Computer, 08 Information and Computing Sciences, 09 Engineering, 11 Medical and Health Sciences, 32 Biomedical and clinical sciences, 42 Health sciences, 46 Information and computing sciences

Abstract:

BACKGROUND: Health care records provide large amounts of data with real-world and longitudinal aspects, which is advantageous for predictive analyses and improvements in personalized medicine. Text-based records are a main source of information in mental health. Therefore, application of text mining to the electronic health records - especially mental state examination - is a key approach for detection of psychiatric disease phenotypes that relate to treatment outcomes. METHODS: We focused on the mental state examination (MSE) in the patients' discharge summaries as the key part of the psychiatric records. We prepared a sample of 150 text documents that we manually annotated for psychiatric attributes and symptoms. These documents were further divided into training and test sets. We designed and implemented a system to detect the psychiatric attributes automatically and linked the pathologically assessed attributes to AMDP terminology. This workflow uses a pre-trained neural network model, which is fine-tuned on the training set, and validated on the independent test set. Furthermore, a traditional NLP and rule-based component linked the recognized mentions to AMDP terminology. In a further step, we applied the system on a larger clinical dataset of 510 patients to extract their symptoms. RESULTS: The system identified the psychiatric attributes as well as their assessment (normal and pathological) and linked these entities to the AMDP terminology with an F1-score of 86% and 91% on an independent test set, respectively. CONCLUSION: The development of the current text mining system and the results highlight the feasibility of text mining methods applied to MSE in electronic mental health care reports. Our findings pave the way for the secondary use of routine data in the field of mental health, facilitating further clinical data analyses.