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N-terminal domain antigenic mapping reveals a site of vulnerability for SARS-CoV-2.

Publication date: 2021-01-14

Author:

McCallum, Matthew
Marco, Anna De ; Lempp, Florian ; Tortorici, M Alejandra ; Pinto, Dora ; Walls, Alexandra C ; Beltramello, Martina ; Chen, Alex ; Liu, Zhuoming ; Zatta, Fabrizia ; Zepeda, Samantha ; di Iulio, Julia ; Bowen, John E ; Montiel-Ruiz, Martin ; Zhou, Jiayi ; Rosen, Laura E ; Bianchi, Siro ; Guarino, Barbara ; Fregni, Chiara Silacci ; Abdelnabi, Rana ; Caroline Foo, Shi-Yan ; Rothlauf, Paul W ; Bloyet, Louis-Marie ; Benigni, Fabio ; Cameroni, Elisabetta ; Neyts, Johan ; Riva, Agostino ; Snell, Gyorgy ; Telenti, Amalio ; Whelan, Sean PJ ; Virgin, Herbert W ; Corti, Davide ; Pizzuto, Matteo Samuele ; Veesler, David

Abstract:

SARS-CoV-2 entry into host cells is orchestrated by the spike (S) glycoprotein that contains an immunodominant receptor-binding domain (RBD) targeted by the largest fraction of neutralizing antibodies (Abs) in COVID-19 patient plasma. Little is known about neutralizing Abs binding to epitopes outside the RBD and their contribution to protection. Here, we describe 41 human monoclonal Abs (mAbs) derived from memory B cells, which recognize the SARS-CoV-2 S N-terminal domain (NTD) and show that a subset of them neutralize SARS-CoV-2 ultrapotently. We define an antigenic map of the SARS-CoV-2 NTD and identify a supersite recognized by all known NTD-specific neutralizing mAbs. These mAbs inhibit cell-to-cell fusion, activate effector functions, and protect Syrian hamsters from SARS-CoV-2 challenge. SARS-CoV-2 variants, including the 501Y.V2 and B.1.1.7 lineages, harbor frequent mutations localized in the NTD supersite suggesting ongoing selective pressure and the importance of NTD-specific neutralizing mAbs to protective immunity.