Title: INCLUSive: INtegrated clustering, upstream of sequence retrieval and motif sampling
Authors: Thijs, Gert ×
Moreau, Yves
De Smet, Frank
Mathys, Janick
Lescot, M
Rombauts, Stephane
Rouze, P
De Moor, Bart
Marchal, Kathleen #
Issue Date: Feb-2002
Publisher: Oxford univ press
Series Title: Bioinformatics vol:18 issue:2 pages:331-332
Abstract: INCLUSive allows automatic multistep analysis of microarray data (clustering and motif finding). The clustering algorithm (adaptive quality-based clustering) groups together genes with highly similar expression profiles. The upstream sequences of the genes belonging to a cluster are automatically retrieved from GenBank and can be fed directly into Motif Sampler, a Gibbs sampling algorithm that retrieves statistically over-represented motifs in sets of sequences, in this case upstream regions of co-expressed genes.
ISSN: 1367-4803
Publication status: published
KU Leuven publication type: IT
Appears in Collections:Vesalius Research Centre (-)
ESAT - STADIUS, Stadius Centre for Dynamical Systems, Signal Processing and Data Analytics
Electrical Engineering - miscellaneous
Environment and Health - miscellaneous
× corresponding author
# (joint) last author

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