Title: Direct observation of two cyclohexenyl (CeNA) ring conformations in duplex DNA
Authors: Robeyns, Koen
Herdewijn, Piet
Van Meervelt, Luc # ×
Issue Date: Jul-2010
Publisher: Landes Bioscience
Series Title: Artificial DNA: PNA & XNA vol:1 issue:1 pages:2-8
Abstract: Cyclohexene Nucleic Acids, in which the 2'-deoxyribofuranose ring of the DNA building blocks is substituted by a cyclohexenyl ring, were designed as potential mimics of natural nucleic acids for antisense and, later, for siRNA applications. CeNAunits, in contrast to HNA building blockx, show more flexibility at the level of the C2'-C3' bond due to the possibility of the cyclohexenyl moiety to adopt diferent conformations. In order to analyze the influence of CeNA residues onto the helix conformation and hydration of natural nucleic acid structures and to verify the cyclohexenyl ring conformation, a cyclohexenyl-thymine building block was incorporated into the non-self-complementary sequence d(GCG(xT)GCG/d(CGCACGC) with (xT) a cyclohexene residue.The crystal structure of this sequence has been determined to a sresolution of 1.17 A end contains two duplexes in the asymmetric unit. The global helices belong to the B-type family and the conformations of the cyclohexenyl rings in both duplexes are different. The cyclohexene ring adopts as well the 2H3-conformation (similar to C2'-endo) as the 3H2-conformation (similar to C3'-endo). The crystal packing is stabilized by cobalt hexamine residues and triplet formation.
ISSN: 1949-095X
Publication status: published
KU Leuven publication type: IT
Appears in Collections:Biochemistry, Molecular and Structural Biology Section
Medicinal Chemistry (Rega Institute)
× corresponding author
# (joint) last author

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