Title: PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes
Authors: Conde, Lucia
Vaquerizas, Juan M
Dopazo, Hernan
Arbiza, Leonardo
Reumers, Joke
Rousseau, Frederic
Schymkowitz, Joost ×
Dopazo, Joaquin #
Issue Date: Jul-2006
Publisher: Oxford univ press
Series Title: Nucleic acids research vol:34 pages:W621-W625
Abstract: We have developed a web tool, PupaSuite, for the selection of single nucleotide polymorphisms (SNPs) with potential phenotypic effect, specifically oriented to help in the design of large-scale genotyping projects. PupaSuite uses a collection of data on SNPs from heterogeneous sources and a large number of pre-calculated predictions to offer a flexible and intuitive interface for selecting an optimal set of SNPs. It improves the functionality of PupaSNP and PupasView programs and implements new facilities such as the analysis of user's data to derive haplotypes with functional information. A new estimator of putative effect of polymorphisms has been included that uses evolutionary information. Also SNPeffect database predictions have been included. The PupaSuite web interface is accessible through and through
ISSN: 0305-1048
Publication status: published
KU Leuven publication type: IT
Appears in Collections:Non-KU Leuven Association publications
× corresponding author
# (joint) last author

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